For the pepCATS descriptor, are the bit patterns listed somewhere?

alexarnimueller / modlAMP

Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.

https://modlamp.org

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For the pepCATS descriptor, are the bit patterns listed somewhere? #14

Closed UnixJunkie closed 3 years ago

UnixJunkie commented 3 years ago

Hello, In the code, is there a table giving the bit pattern for each of the 20 amino acids? I looked in the code but couldn't find it. Thanks a lot, F.

alexarnimueller commented 3 years ago

Hi F Yes, the scales are defined in the function load_scale(scalename) in modlamp.core on line 803. Hope that helps

UnixJunkie commented 3 years ago

Ok, on line 887 I see the pepCATS bit patterns. Thanks!

UnixJunkie commented 3 years ago

I could not find those initially because github's search is case-sensitive and I was looking for 'pepCATS'...

alexarnimueller commented 3 years ago

Ah OK that's good to know, thanks