Open poppop-dot opened 1 month ago
It looks like your data frame is organized with one dataset per row. Can you try to transpose it to one dataset per column?
e.g. df.T
It looks like your data frame is organized with one dataset per row. Can you try to transpose it to one dataset per column? e.g.
df.T
I have tried transposing the array before typing it, or recreating a new array. But the error is shown: Traceback (most recent call last): File "d:/reoccur/amp-gan/ampgan/evaluation/analyze_seq.py", line 44, inanalysis.plot_summary() File "E:\anaconda3\envs\ampgan_test\lib\site-packages\modlamp\analysis.py", line 231, in plot_summary patch.set(facecolor=colors[p], edgecolor='black', alpha=0.8) IndexError: list index out of range
In my attempt, only the (3,3) arrays can run, nothing else
Hello @alexarnimueller: I used the GlobalAnalysis method you provided to compare different sequence libraries:
Traceback (most recent call last): File "d:/reoccur/amp-gan/ampgan/evaluation/analyze_seq.py", line 44, in
analysis.plot_summary()
File "E:\anaconda3\envs\ampgan_test\lib\site-packages\modlamp\analysis.py", line 304, in plot_summary
color=colors[:num])
File "E:\anaconda3\envs\ampgan_test\lib\site-packages\matplotlib__init__.py", line 1414, in inner
return func(ax, *map(sanitize_sequence, args), **kwargs)
File "E:\anaconda3\envs\ampgan_test\lib\site-packages\matplotlib\axes_axes.py", line 6597, in hist
raise ValueError(f"The 'color' keyword argument must have one "
ValueError: The 'color' keyword argument must have one color per dataset, but 2000 datasets and 3 colors were provided
The 2 D array shape of my input is (3,5000)。