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alexchwong / SpliceWiz

SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
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collateData error #64

Closed alicinwndlnd closed 1 month ago

alicinwndlnd commented 3 months ago

Hi,

I'm trying to run collateData but I've been getting this error Error: Object 'exon_group_up' not found amongst [seqnames, start, end, Name, Null, strand] during "...grouping introns". I'm not sure what's the issue is but I think it might related to ".overlaps_exon_island" not running properly. And I couldn't find this function anywhere.

alexchwong commented 2 months ago

Hi there,

Please provide version of SpliceWiz being used. Latter versions have work-arounds to deal with GTF files without valid exon_number annotations.