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alexcritschristoph / soil_popgen

Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
GNU General Public License v3.0
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No module named 'allel' #8

Closed ChenTianYi99 closed 5 months ago

ChenTianYi99 commented 5 months ago

Hi, I have successfully installed inStrain_lite. However, when I try 'python fst.py' command, I encountered 'ModuleNotFoundError: No module named 'allel'. It seems 'allel' could not be installed via pip. How to fix it?

Thanks in advance.

alexcritschristoph commented 5 months ago

Here's the scikit allel package: https://scikit-allel.readthedocs.io/en/stable/

Note the code in this repo is several years old, and no longer maintained - you might prefer using inStrain: https://instrain.readthedocs.io/