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alexdobin / STAR

RNA-seq aligner
MIT License
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mapping transcripts to genome #1031

Open binlu1981 opened 3 years ago

binlu1981 commented 3 years ago

Hi @alexdobin ,

Can I use Star to map assembled transcripts to genome?

Best regards Bin

alexdobin commented 3 years ago

Hi Bin,

you can try to use STARlong to map long sequences (such as transcripts), provided that the sequence error rate is <3-5%

Cheers Alex