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alexdobin / STAR

RNA-seq aligner
MIT License
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Genome generate Killed #1032

Open ezhoden opened 4 years ago

ezhoden commented 4 years ago

Hello, @alexdobin I have 6-core processor and 32 RAM. Tried to generate genome indexes, but it failed. I read a lot off themes with similar problem, but none of solutions helped. I also tried to use --limitGenomeGenerateRAM, but it failed. Log.out.txt

Thanks

ezhoden commented 4 years ago

Also tried this: Log.out2.txt

alexdobin commented 3 years ago

Hi Denis,

the RAM required to generate this genome will be close to 32G, so you need to make sure that no other memory-intensive processes are running - free and top commands can help you with that. You can try these parameters:

--genomeChrBinNbits 16 --genomeSAindexNbases 12 --limitSjdbInsertNsj 345000

If these parameters do not help, you would need to use --genomeSAsparseD 2.

Cheers Alex