What I want to do.
I want to map two reads to a index by running the following command
The reads I am using are not reads created by single cell RNA-seq.
STAR --genomeDir ... /... /STAR_mm10_index_default --readFilesIn ... /... /SRRxx/xxx1.fq ... /... /SRRxxx/xxx2.fq --outSAMtype BAM Unsorted
environment.
mac book pro m1 chip
Phenomenon
Execution result is segment fault.
What was done
I debugged STAR using lldb.
The readFeat initialisation process in lines 12 and 15 of SoloRead.cpp is not executed.
Accessing an uninitialised readFeat at line 21 causes a segement fault.
Question.
Is SoloRead executed when using reads created by single cell RNA-seq?
Does a segement fault occur whenever soloType is None?
Could there be missing options when running STAR?
Hello! Alex, Thanks for supporting STAR.
What I want to do. I want to map two reads to a index by running the following command The reads I am using are not reads created by single cell RNA-seq.
STAR --genomeDir ... /... /STAR_mm10_index_default --readFilesIn ... /... /SRRxx/xxx1.fq ... /... /SRRxxx/xxx2.fq --outSAMtype BAM Unsorted
environment. mac book pro m1 chip
Phenomenon Execution result is segment fault.
What was done I debugged STAR using lldb. The readFeat initialisation process in lines 12 and 15 of SoloRead.cpp is not executed. Accessing an uninitialised readFeat at line 21 causes a segement fault.
Question. Is SoloRead executed when using reads created by single cell RNA-seq? Does a segement fault occur whenever soloType is None? Could there be missing options when running STAR?
Thanks very much.