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alexdobin / STAR

RNA-seq aligner
MIT License
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Error, don't understand arguments: [--chimOutType WithinBAM Junctions SeparateSAMold] #1536

Open ataaillah opened 2 years ago

ataaillah commented 2 years ago

Dear All, I'm running STAR-Fusion with this option: --chimOutType WithinBAM , and it gives the following error: Error, don't understand arguments: [--chimOutType WithinBAM] at /usr/local/bioinfo/src/STAR-Fusion/STAR-Fusion-v1.10.0/STAR-Fusion line 481 this option exists in the STAR manual 2.7.0a but not in STAR-Fusion/STAR-Fusion-v1.10.0/STAR-Fusion code. Could you help ? thanks best, Ataaillah

alexdobin commented 2 years ago

Hi Aataaillah,

it's best to ask Brian Haas directly about STAR-Fusion: https://github.com/STAR-Fusion/STAR-Fusion