Skipping counting while keeping barcode and UMI tags

alexdobin / STAR

RNA-seq aligner

MIT License

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Skipping counting while keeping barcode and UMI tags #1646

Open yagam-fluent opened 2 years ago

yagam-fluent commented 2 years ago

Hi Alex,

This is the same question as this issue: https://github.com/alexdobin/STAR/issues/790

The solution you proposed does eliminate counting, but it also causes all the barcode tags to be "-" because of the fake whitelist. Is there a way to skip counting while preserving the CB and UB tags?

Thanks!

alexdobin commented 2 years ago

Hi @yagam-fluent

without counting and passlist, error correction is not performed, and CB/UB tags are not needed. However, uncorrected CR/UR tags will be output.