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alexdobin / STAR

RNA-seq aligner
MIT License
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Installing `STAR` in Docker arch image fails #1661

Open Ganz1285 opened 1 year ago

Ganz1285 commented 1 year ago

I tried to install STAR in bioarchlinux docker image. I did the following Installation instructions with gcc installed.

  1. Download source code - wget https://github.com/alexdobin/STAR/archive/2.7.10a.tar.gz
  2. Extract source - tar -xzf 2.7.10a.tar.gz
  3. STAR-2.7.10a/source
  4. make STAR

Dockerfile:

FROM bioarchlinux/bioarchlinux RUN pacman -Syu --noconfirm RUN pacman -S make --noconfirm RUN pacman -S wget gcc --noconfirm RUN wget https://github.com/alexdobin/STAR/archive/2.7.10a.tar.gz RUN tar -xzf 2.7.10a.tar.gz WORKDIR STAR-2.7.10a/source RUN make STAR

Docker build fails. Terminal recording of build fail is attached https://asciinema.org/a/TiwwT04qAEU3zdC4MXkvoYrou

alexdobin commented 1 year ago

Not sure what this is caused by, might be some incompatibility in the GCC libraries.