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alexdobin / STAR

RNA-seq aligner
MIT License
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RNAseq genomeGenerate: killed #1720

Open brittanieyukimtiao opened 1 year ago

brittanieyukimtiao commented 1 year ago

Hi! I am trying to generate a genome, and I have attached my script below:

Screen Shot 2022-12-03 at 5 50 12 AM

I believe I have sufficient RAM to run the program (although I could be wrong), and have also attached a picture of my LogOut file

Screen Shot 2022-12-03 at 5 32 49 AM

Any help would be appreciated, thank you so much!

alexdobin commented 1 year ago

Hi Brittanie,

The most common reason for "Killed" is insufficient RAM. You can check it with free -g command. This genome will require ~32GB.

brittanieyukimtiao commented 1 year ago

Hi Alex! Sorry for the late response, I believe I do have enough RAM for this process, I've attached it below.

Screen Shot 2023-01-08 at 12 35 03 PM
alexdobin commented 1 year ago

Hi Brittanie, another thing to check is the limit on memory, with ulimit -a command.