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alexdobin / STAR

RNA-seq aligner
MIT License
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Feature request for --quantTranscriptomeBan #2123

Open dincarnato opened 2 months ago

dincarnato commented 2 months ago

Dear Alex,

hope you are well. I am writing to ask whether it would be possible to add to the --quantTranscriptomeBan parameter the option None, so that no alignment will be banned/discarded. For instance, in some cases it can be useful to pre-merge R1 and R2 using tools such as PEAR, which would lead to all alignments being single end.

Thanks in advance!

Cheers, Danny

dincarnato commented 2 months ago

I actually now see that the option has been superseded by quantTranscriptomeSAMoutput, sorry for that.