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alexdobin
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STAR
RNA-seq aligner
MIT License
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multi mapping parameters and centromere
#2110
ptranvan
opened
2 months ago
3
Read Count Discrepancy
#2109
bshim181
opened
2 months ago
1
Installing STARsolo on M1 mac
#2108
jfoedfjwofa
opened
2 months ago
2
No Chimeric.out.junction file generated
#2107
Mirable8me
opened
2 months ago
3
Aligned BAM files have some reads with not its paired mates
#2106
teryyoung
opened
3 months ago
2
EXITING because of FATAL ERROR: cannot insert junctions on the fly because of strand GstrandBit problem
#2105
sukhmanpreet33
opened
3 months ago
1
Error building docker image when compiling STAR on Mac M2 chip : error g++: error: unrecognized command-line option '-mavx2'
#2104
mblanche
opened
3 months ago
0
Chimeric reads alignment. Some threads take much longer to complete.
#2103
alexfriman
opened
3 months ago
1
Why some alignments do not include GX tag or include "GX:Z:-"
#2102
L1angyan
closed
2 months ago
1
Issues when I try to use STAR to align RNAseq reads to genome index
#2101
jqzjqz0707
opened
3 months ago
0
Resolved: "BUG: next index is smaller than previous, EXITING" Error During Genome Index Generation with STAR
#2100
YAMIR-1138
closed
2 months ago
2
ReadsPerGene.out.tab column values clarification
#2099
mkazanov
closed
2 months ago
2
STARsolo: --twopassMode Basic not compatible with --soloFeatures GeneFull_Ex50pAS
#2098
zhouyiqi91
opened
3 months ago
0
Velocyto output from starsolo
#2097
RafaellaFerraz
opened
3 months ago
1
Junction counts in STARsolo matrix.mtx do not match actual counts
#2096
NaotoKubota
opened
3 months ago
3
soloCellFiltering only output is features.tsv
#2095
marlmatos
closed
3 months ago
1
Star, Strandedness
#2093
laudycherry
opened
3 months ago
3
Reads spanning multiple genes in bam file
#2092
ireferraris
opened
3 months ago
1
Chimeric alignment with AS = 0 ?
#2091
karlestira
opened
3 months ago
1
STAR Diploid 2.7.11b Segmentation fault (core dumped) after 1st PASS mapping for a subset of samples.
#2090
archanaraja
opened
3 months ago
3
Does clip5pNbases affect outFilterMatchNminOverLread?
#2089
johnchamberlin
opened
3 months ago
1
CIGAR X and = instead of M
#2088
ggPeti
opened
3 months ago
1
cannot insert junctions on the fly because of strand GstrandBit problem
#2087
yujung-c
opened
3 months ago
1
STARsolo knee-like cell filtering
#2086
mkazanov
closed
3 months ago
2
STAR diploid sometimes labels reads as haplotype specific in regions with no variants
#2085
mparker2
opened
3 months ago
2
Number of lines in BAM file?
#2084
yagam-fluent
opened
3 months ago
1
Counting intron reads in bulk RNA-seq
#2083
jcm6t
closed
3 months ago
2
High percentage of reads not mapped, considered "too short"
#2082
thallinger
opened
4 months ago
2
Selection of GTF file from gencode
#2081
SueFletcher
opened
4 months ago
3
Installation error on a Mac
#2080
theokirkland
closed
3 months ago
2
Long "Cellbarcode" limitation
#2079
chenweng1991
opened
4 months ago
2
Any way to increase penalty for a mismatch?
#2078
karlestira
closed
3 months ago
2
"--genomeTransformOutput" only worked on the first chromosome in the genome
#2077
kuowenhsi
opened
4 months ago
1
STARsolo not assigning reads to genes, FASTQs generated on a Novaseq X
#2076
muktic
opened
4 months ago
2
STAR2.7.11b indexing BUG: next index is smaller than previous, EXITING
#2074
hansong798
opened
4 months ago
1
Calculation of sequencing saturation
#2073
nbartonicek
opened
4 months ago
1
Segmentation Fault
#2072
AhmedSAHassan
opened
4 months ago
3
When `soloOutFormatFeaturesGeneField3` is `+`, write GeneBiotype as FeaturesGeneField3.
#2071
galaxy001
opened
4 months ago
0
STARsolo BAM sorting required too much RAM
#2070
cliff891
closed
3 months ago
4
Help for option to output geneBiotype from `geneInfo.tab` to `features.tsv`.
#2069
galaxy001
opened
4 months ago
0
high % of reads mapped to no features gene counts
#2068
teryyoung
opened
4 months ago
3
Incorrect SAM flag set in BAM file when processing 10X single-cell 5prime data?
#2067
edg1983
opened
4 months ago
1
Incorrect mate start with supplementary alignments
#2066
adthrasher
opened
4 months ago
2
versionGenome issue / clarification
#2065
kvn95ss
opened
4 months ago
1
Assertion `compressBound(0xff00) < 0x10000' failed when using STAR 2.7.9a
#2063
RobAlbn
opened
4 months ago
5
Feature suggestion: Check for existence and format of all required files at startup in addition to first use.
#2062
alanhoyle
opened
4 months ago
0
genomeParameters.txt not found
#2061
EmanAbda
opened
4 months ago
1
issues with script soloCountMatrixFromBAM.awk
#2060
marlmatos
closed
3 months ago
3
Error with parametersDefault while compiling
#2059
rajivpathak-git
opened
4 months ago
0
STARsolo CB_samTagOut mode error in combo with STAR diploid
#2058
mparker2
opened
4 months ago
5
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