In the Braid plot UI, it's possible to choose a gene set, but also individual genes (see second tab)
If you choose a gene set, those genes in the set populate the genes tab. You can then add or subtract genes that interest you.
I devised this feature after having finished the pathway bar plot.
The bar plot is custom-built for 3 specific datasets:
Now that we're "polymorph-izing" pathway bar plots, it makes sense to replace those other tabs with useful functions, assuming a single dataset. The first obvious such tab is "Genes".
It should be possible to select an arbitrary gene list and see those genes in the bar plot.
It should also be possible to select a pathway and the genes in that pathway show up in the genes tab.
Finally, it should be possible to edit those genes in the gene tab that were populated by selecting a pathway.
In the Braid plot UI, it's possible to choose a gene set, but also individual genes (see second tab)
If you choose a gene set, those genes in the set populate the genes tab. You can then add or subtract genes that interest you.
I devised this feature after having finished the pathway bar plot.
The bar plot is custom-built for 3 specific datasets:
Now that we're "polymorph-izing" pathway bar plots, it makes sense to replace those other tabs with useful functions, assuming a single dataset. The first obvious such tab is "Genes".