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alexpiper / taxreturn

An R package for creating taxonomic reference databases for metabarcoding studies
GNU General Public License v3.0
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Remove dependency on insect::purge #12

Closed alexpiper closed 4 years ago

alexpiper commented 4 years ago

Currently to detect misannotated sequences there is a reliance on the purge function from the insect package. This currently requires some reformatting pre and post purge. Would be nice to replace this with an internal function that uses the get_ranked_lineage() to retrieve the NCBI taxonomy and calls kmer::otu directly