Not removing adapters properly

[GoogleCodeExporter]

What steps will reproduce the problem?
1. run cutadapt with -a TGGAATTCT -e 2.0 -O 7

What is the expected output? What do you see instead?

Should remove both TGGAATTCT* and GGAATTCT*.
Removes the former, but not the latter - there are still lots of GGAATTCT* in 
there

What version of the product are you using? On what operating system?

1.1, Scientific Linux

Please provide any additional information below.

Original issue reported on code.google.com by mick.wat...@roslin.ed.ac.uk on 29 Sep 2012 at 9:07

[GoogleCodeExporter]

Are you sure that is the command-line you were using? "-e 2.0" results in this 
message:
cutadapt: error: The maximum error rate must be between 0 and 1.

Please also provide the sequence of a read that wasn't trimmed properly, so I 
can reproduce the problem.

Original comment by marcel.m...@tu-dortmund.de on 1 Oct 2012 at 9:54

[GoogleCodeExporter]

No feedback, closing. Please add a comment or open a new report if you have 
more information.

Original comment by marcel.m...@tu-dortmund.de on 8 Oct 2012 at 1:11

• Changed state: Invalid