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alexstaj / cutadapt

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input fastq.gz error #67

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
>cutadapt -a TGGAATTCT input.fastq.gz > output.fastq

If applicable, please provide a minimal example, such as the sequence of a
single read that was not trimmed correctly.

What is the expected output? What do you see instead?
No reads were read! Either your input file is empty or you used the wrong 
-f/--format parameter. 

???What is the correct -f or other setting to use fastq.gz Illumina input?

Original issue reported on code.google.com by mortense...@epa.gov on 11 Jul 2013 at 1:07

GoogleCodeExporter commented 9 years ago 
That command line should work exactly as you wrote it, no -f setting is 
necessary. Is output.fastq really empty as the message indicates?

What does the command "zcat input.fastq.gz | head" give you?

Original comment by marcel.m...@tu-dortmund.de on 11 Jul 2013 at 2:32

GoogleCodeExporter commented 9 years ago 
Haven't received further information, closing for now.

Original comment by marcel.m...@tu-dortmund.de on 9 Feb 2014 at 10:06