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alexstaj / cutadapt

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cutadapt 1.5: -f not recognized in paired trimming mode #78

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Using cutadapt 1.5. Have extensions of ".fqs". Using both '-f fastq' and 
'--format=fastq' in paired trimming mode caused error of unmatched extension.

Pseudocode: cutadapt -f fastq -q 10 -a NNNNNNNNNNN -o r1.tmp -p r2.tmp r1.fqs 
r2.fqs

Changing extensions to '.fastq' resolves and runs with no problem.

Original issue reported on code.google.com by dr.eli.r...@gmail.com on 19 Aug 2014 at 6:17

GoogleCodeExporter commented 9 years ago 
Thanks for the report. This is a actually a duplicate of issue #77, which was 
fixed yesterday.

Original comment by marcel.m...@tu-dortmund.de on 20 Aug 2014 at 8:02