I have had conventional bulk RNA-seq and used MIXCR to do T and B cells analysis, I have then followed your Bulk Repertoires tutorial.
In Visualising Clonal Frequencies Using Donut Plots section, you mention: the black section of the plot shows cells in unexpanded clones, while the remaining sections indicate the expanded clones by their frequency
As the data is bulk RNA-seq, please, what do you mean by cells here?
Hi
I have had conventional bulk RNA-seq and used MIXCR to do T and B cells analysis, I have then followed your Bulk Repertoires tutorial.
In
Visualising Clonal Frequencies Using Donut Plots section, you mention:the black section of the plot shows cells in unexpanded clones, while the remaining sections indicate the expanded clones by their frequencyAs the data is bulk RNA-seq, please, what do you mean by
cellshere?This is my plot for TCR for one PBMC sample
Thanks for any clarification