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alexyermanos / Platypus

R package for the analysis of single-cell immune repertoires
GNU General Public License v3.0
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how to integrate the seurat analysis GEX results to Platypus #26

Closed songeric1107 closed 1 year ago

songeric1107 commented 1 year ago

Is there a way to integrate the GEX seurat object to Platypus without starting the analysis from the beginning?

vickreiner commented 1 year ago

Hi! Yes, to the parameter Seurat.in you can provide your existing processed Seurat object. For correct integration the metadata of this object must contain a group_id column (1 - n) and a sample_id column formatted as s1, s2... in the same order as VDJ paths.

Hope that helps! Let me know if any questions come up!