I recently tried integrating VDJ and GEX data using the 'VDJ_GEX_matrix' function and the GEX data failed to load (the VDJ data loaded successfully). I previously performed the integration on a subset of my samples using the same file paths and it worked appropriately and the files have not moved. I haven't been able able to figure out where the error is and would appreciate any help you can provide. I have included relevant screenshots below:
Here are the file paths:
Here is the VDJ_GEX_matrix function:
Here is the resulting error message:
Here is the contents of the Cell Ranger 'outs' folder for one of the samples:
I recently tried integrating VDJ and GEX data using the 'VDJ_GEX_matrix' function and the GEX data failed to load (the VDJ data loaded successfully). I previously performed the integration on a subset of my samples using the same file paths and it worked appropriately and the files have not moved. I haven't been able able to figure out where the error is and would appreciate any help you can provide. I have included relevant screenshots below:
Here are the file paths:
Here is the VDJ_GEX_matrix function:
Here is the resulting error message:
Here is the contents of the Cell Ranger 'outs' folder for one of the samples:
Thank you for your help!