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alfnie / conn

CONN toolbox, development version (conn-toolbox.org)
http://web.conn-toolbox.org
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fmriprep-confound not including "echo" #4

Open karl-koschutnig opened 3 years ago

karl-koschutnig commented 3 years ago

Hi, I just wanted to inform you that I had some problems importing the confounds.tsv files from a fmriprep-dataset. This is a name of an example bold-file: sub-01_ses-1_task-rest_run-1_echo-1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz and the corresponding confounds file is: sub-01_ses-1_task-rest_run-1_desc-confounds_timeseries.tsv

The conn-toolbox couldn't recognize it, because of the missing "_echo-1" in the tsv. After I manually renamed the tsv to: sub-01_ses-1_task-rest_run-1_echo-1_desc-confounds_timeseries.tsv everything worked fine!!

Best, Karl

alfnie commented 3 years ago

Thanks for reporting this and sorry for the late reply! This issue has been addressed in one of the recent updates (it should be no longer necessary to rename these files for CONN to properly find the associated confounds .tsv files). If you have a chance to try that out and still run into any issues please let me know Thanks again Alfonso