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algaebrown / circSTAMP_pipe

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No "memory" param in rule "rip_get_counts" #1

Open byee4 opened 6 months ago

byee4 commented 6 months ago

Command (uses nextera_11.yaml) to reproduce:

snakemake -s SnakeMain.smk \
    --configfile tao_nextera11.yaml \
    --profile /tscc/projects/ps-yeolab4/software/circstamp/c89ea98/bin/circSTAMP_pipe/profiles/tscc2

Actual error message:

WorkflowError:
Error when formatting 'sbatch -t {params.run_time} -e {params.error_out_file} -o stdout/{rule} -p condo -q condo -A csd792 --tasks-per-node {params.cores} --job-name {rule} --mem {params.memory}' for rule rip_get_counts. 'Params' object has no attribute 'memory'