Same flag `-f` for both `--forward-only` and `--colored-query-output-format` options in queries

algbio / ggcat

Compacted and colored de Bruijn graph construction and querying

MIT License

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Same flag `-f` for both `--forward-only` and `--colored-query-output-format` options in queries #43

Closed fingels closed 6 months ago

fingels commented 6 months ago

According to the README, the same flag -f is used for both the --forward-only and the --colored-query-output-format options for queries.

I noticed the problem when trying to use the colored query with -f JsonLinesWithNames (as indicated in the README) but it tried to operate the forward only option instead.

Guilucand commented 6 months ago

Hi @fingels, there was an error in the readme, as the flag -f is actually mapped only for the --forward-only flag. I fixed the issue in the documentation.

Best, Andrea