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algbio / ggcat

Compacted and colored de Bruijn graph construction and querying
MIT License
72 stars 10 forks source link

access datasets of origin #46

Open kamimrcht opened 5 months ago

kamimrcht commented 5 months ago

Hi,

I would need an option to access the original datasets of each unitig constructed by GGCAT. The output could be heavy, but a first idea would be to write this info in the header instead of the colors.

Best.

Guilucand commented 5 months ago

Hi @kamimrcht,

you have a colored graph and want access to the colors, right? (by default color names are the origin files of each unitig). If that is your request, I'm just developing a new cli option for GGCAT to extract these data, it will be available soon.

Best

kamimrcht commented 5 months ago

Awesome thank you. Looking forward to it.