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algbio / matchtigs

Minimum plain text representation of kmer sets
BSD 2-Clause "Simplified" License
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Cannot run matchtigs #3

Closed enricorox closed 1 year ago

enricorox commented 1 year ago

Hi! I've installed the last version of matchtigs using mamba.

Running matchtigs I obtain

$ matchtigs --debug-print-graphtrue

'?'

That may be is expected but I cannot run --help or --version

$ matchtigs --help assigning values to '' wasn't recognized' which wasn't expected, or isn't valid

$ matchtigs --version Found argument 'version

matchtigs'

What I am doing wrong? Thanks.

In case it helps

$ uname -a Linux xxxxxxxxxxxx 4.18.0-492.el8.x86_64 #1 SMP Tue May 9 17:56:55 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

sebschmi commented 1 year ago

Hi! That is strange. I just tried to do the same via mamba. It installs version 1.5.5. The output of the commands is then as expected.

I installed matchtigs with mamba install -c conda-forge -c bioconda matchtigs.

Then e.g. matchtigs --version outputs:

07:57:54 [INFO] Logging initialised successfully
matchtigs 1.1.0

Apparently, the version is not correct, but the program itself seems to work. The version not being correct is because the wrong version is hardcoded, and not because mamba would install anything wrong.

sebschmi commented 1 year ago

Let me update the mamba version to the latest version of this repository, and then we can try again.

enricorox commented 1 year ago

Great! conda update -c conda-forge -c bioconda matchtigs fixed my problem.

Thanks!