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algbio
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themisto
Space-efficient pseudoalignment with a colored de Bruijn graph
GNU General Public License v2.0
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Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows
#45
dependabot[bot]
opened
1 month ago
0
Store input names in the index
#44
tmaklin
opened
1 month ago
2
Fix workflow for generating binaries
#43
tmaklin
closed
1 month ago
1
[Feature Request] Bioconda installation
#42
jolespin
opened
2 months ago
2
Recommended usage for metatranscriptomics
#41
jolespin
closed
2 months ago
2
stochastic bug causes themisto build to hang indefinitely (themisto_linux-v3.2.1)
#40
rohanmaddamsetti
opened
3 months ago
3
Fix macOS precompiled binaries build
#39
tmaklin
closed
3 months ago
0
Add precompiled binaries workflow
#38
tmaklin
closed
4 months ago
0
Throw error if manual color ids are not integers
#37
jnalanko
opened
4 months ago
0
Incorrect number of read alignments returned
#36
harry-thorpe
closed
5 months ago
12
installation error with rust on macOS
#35
rohanmaddamsetti
closed
3 months ago
12
minor documentation issue: need to "git clone" for themisto installation instructions to work
#34
rohanmaddamsetti
opened
6 months ago
0
option to print genome labels from index?
#33
clb21565
closed
9 months ago
5
Wrong version number printed
#32
jnalanko
closed
5 months ago
1
terminate called after throwing an instance of 'std::runtime_error' what(): BUG: dead end in get_color_set_id
#31
dbu008
opened
11 months ago
13
BZip2 build dependencies removed
#30
iosfwd
closed
1 year ago
0
Themisto hangs with invalid input format
#29
AntonBogun
closed
1 year ago
2
Output is not sorted with --sort-output
#28
AntonBogun
closed
1 year ago
2
Update ggcat (track algbio/ggcat, update version)
#27
tmaklin
closed
1 year ago
0
Return `0` from main if ran with `--help` or without any arguments.
#26
tmaklin
closed
1 year ago
0
core dumped during sorting KMC database
#25
shenwei356
closed
1 year ago
4
Compilation issue
#24
jermp
opened
1 year ago
9
Fix Cmake issues
#23
jnalanko
closed
1 year ago
0
Sort coli file list in ascending order
#22
CowKeyMan
closed
1 year ago
0
update SBWT and README
#21
iosfwd
closed
1 year ago
0
themisto build dies when multithreading
#20
clb21565
closed
1 year ago
9
BOSS_TEST.construction hangs sometimes
#19
jnalanko
opened
2 years ago
0
Randomize non-ACGT and then build colors by --load-dbg may fail?
#18
jnalanko
opened
2 years ago
0
segmentation fault when trying to build without using the -c argument
#17
PandorasRed
closed
2 years ago
11
Print pseudoalignments if the output file `-o` is not given.
#16
tmaklin
closed
2 years ago
0
Add missing include for gtest.h when building tests.
#15
tmaklin
closed
2 years ago
0
Add --min-colors option to extract maximal unitigs, where each node has at least --min-colors colors.
#14
tmaklin
closed
2 years ago
1
Loading a precomputed de Bruijn graph requires `--node-length` parameter despite contrary info in the documentation
#13
tmaklin
closed
2 years ago
1
Odd behavior if input multifasta to `build` contains empty sequences
#12
tmaklin
closed
1 year ago
1
Themisto executable or conda version?
#11
Jgruetzke
opened
2 years ago
1
Sequence and reverse complement generating different unitigs
#10
krobison13
opened
2 years ago
1
`terminate called after throwing an instance of 'std::bad_alloc'` when asking for more memory than is available
#9
tmaklin
opened
2 years ago
0
fastq fix
#8
iosfwd
closed
3 years ago
1
speeding up preprocessing
#7
iosfwd
closed
3 years ago
0
Indexes for the same de Bruijn graph built from a different number of copies of the same FASTA file have different sizes
#6
karel-brinda
closed
2 years ago
5
27092 Killed: 9
#5
karel-brinda
closed
4 years ago
4
Add .fa file support (Fixes #2)
#4
tmaklin
closed
4 years ago
0
Themisto doesn't work with any input data (Error: Cannot open temporary file tmp/kmc_00250.bin)
#3
karel-brinda
closed
4 years ago
2
*.fa suffix is not supported
#2
karel-brinda
closed
4 years ago
1
speeding up preprocessing
#1
iosfwd
closed
3 years ago
1