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🔨 🍇 💻 🚀 GraphScope: A One-Stop Large-Scale Graph Computing System from Alibaba | 一站式图计算系统
https://graphscope.io
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[BUG] Mac M2 computer, installing gs/interactive encounters an error. #3447

Open pomelo-nwu opened 10 months ago

pomelo-nwu commented 10 months ago

Describe the bug Mac M2 computer, installing gs/interactive encounters an error.

To Reproduce Steps to reproduce the behavior:

py39) ➜  interactive bin/gs_interactive destroy
[2023-12-20 15:16:06] -INFO- HOST_DB_HOME = /Users/pomelo/Desktop/graphscope/interactive 
[2023-12-20 15:16:06] -INFO- Finish create log dir 
[2023-12-20 15:16:07] -INFO- process GraphServer is not running in container interactive-server 
[2023-12-20 15:16:07] -INFO- process interactive_server is not running in container interactive-server 
Are you sure to destroy the database? [y/n]y
[2023-12-20 15:16:09] -INFO- Destroying database... 
interactive-server
interactive-server
Password:
Sorry, try again.
Password:
[2023-12-20 15:16:18] -INFO- Finish destroy database 
[2023-12-20 15:16:41] -INFO- HOST_DB_HOME = /Users/pomelo/Desktop/graphscope/interactive 
[2023-12-20 15:16:41] -INFO- Finish create log dir 
[2023-12-20 15:16:41] -INFO- Start initiating database... 
[2023-12-20 15:16:41] -INFO- Check running containers and exit 
[2023-12-20 15:16:41] -INFO- finish check 
[2023-12-20 15:16:41] -INFO- Ok, no running instance found, start init database... 
[2023-12-20 15:16:41] -INFO- Found docker db home: /home/graphscope/workspace/ 
[2023-12-20 15:16:41] -INFO- Found databse version: 10ecb95-aarch64 
[2023-12-20 15:16:41] -INFO- Found host path: /Users/pomelo/Desktop/graphscope/interactive/examples/modern_graph/ 
[2023-12-20 15:16:41] -INFO- Found host path: /Users/pomelo/Desktop/graphscope/interactive/data 
[2023-12-20 15:16:41] -INFO- Found docker volumes:  -v /Users/pomelo/Desktop/graphscope/interactive/examples/modern_graph/:/home/graphscope/gs_interactive_default_graph -v /Users/pomelo/Desktop/graphscope/interactive/data:/home/graphscope/workspace//data 
[2023-12-20 15:16:41] -INFO- Found docker port:  -p 7687:7687 -p 10000:10000 -p 7777:7777 
[2023-12-20 15:16:41] -INFO- Running cmd: docker run -it -d --privileged --name interactive-server  -p 7687:7687 -p 10000:10000 -p 7777:7777  -v /Users/pomelo/Desktop/graphscope/interactive/examples/modern_graph/:/home/graphscope/gs_interactive_default_graph -v /Users/pomelo/Desktop/graphscope/interactive/data:/home/graphscope/workspace//data registry.cn-hongkong.aliyuncs.com/graphscope/interactive:10ecb95-aarch64 bash 
b767f06d5e4c1f6c111884c12c96d28c400726c04fd7d34ac4b8bc8360049110
[2023-12-20 15:16:41] -INFO- Finish init database 
[2023-12-20 15:16:41] -INFO- stored type : true 
[2023-12-20 15:16:41] -INFO- Finish amplify schema file /Users/pomelo/Desktop/graphscope/interactive/examples/modern_graph/modern_graph.yaml to /tmp//graph0.yaml 
[2023-12-20 15:16:41] -INFO- Check graph whether is not running 
[2023-12-20 15:16:41] -INFO- Check lock file /home/graphscope/workspace//data/gs_interactive_default_graph/.lock 
Successfully copied 3.58kB to interactive-server:/home/graphscope/workspace//data/gs_interactive_default_graph/graph.yaml
Successfully copied 3.58kB to interactive-server:/home/graphscope/workspace//data/gs_interactive_default_graph/graph0.yaml
[2023-12-20 15:16:42] -INFO- Successfuly create graph [gs_interactive_default_graph] 
[2023-12-20 15:16:42] -INFO- Import data to graph [gs_interactive_default_graph] from /Users/pomelo/Desktop/graphscope/interactive/examples/modern_graph/bulk_load.yaml 
[2023-12-20 15:16:42] -INFO- container interactive-server is running 
[2023-12-20 15:16:42] -INFO- bulk_load_file /Users/pomelo/Desktop/graphscope/interactive/examples/modern_graph/bulk_load.yaml exists 
[2023-12-20 15:16:42] -INFO- Check graph whether is not running 
[2023-12-20 15:16:42] -INFO- Check lock file /home/graphscope/workspace//data/gs_interactive_default_graph/.lock 
[2023-12-20 15:16:42] -INFO- Graph Schema exists 
Successfully copied 4.1kB to interactive-server:/tmp//bulk_load.yaml
[2023-12-20 15:16:42] -INFO- Running cmd: /opt/flex/bin/bulk_loader -g /home/graphscope/workspace//data/gs_interactive_default_graph/graph.yaml -l /tmp//bulk_load.yaml -d /home/graphscope/workspace//data//gs_interactive_default_graph/indices 
WARNING: Logging before InitGoogleLogging() is written to STDERR
I1220 15:16:42.651258    87 loader_factory.cc:66] Registering loader: file, format:csv
I1220 15:16:42.651477    87 loader_factory.cc:66] Registering loader: odps, format:arrow
I1220 15:16:42.653364    87 schema.cc:815] Parse stored_procedures
I1220 15:16:42.653872    87 loading_config.cc:548] scheme: file, data_location: /home/graphscope/gs_interactive_default_graph/, method: init, delimiter: |, include header row: true
I1220 15:16:42.653999    87 loading_config.cc:209] Successfully parsed vertex mapping size: 1
I1220 15:16:42.654377    87 loading_config.cc:209] Successfully parsed vertex mapping size: 2
I1220 15:16:42.654590    87 loading_config.cc:440]  Try to parse 2 edge configuration
I1220 15:16:42.661477    87 csv_fragment_loader.cc:295] Loading vertices with single thread...
I1220 15:16:42.670364    87 csv_fragment_loader.cc:613] Loading edges with single thread...
[2023-12-20 15:16:42] -INFO- Successfuly import data to graph [gs_interactive_default_graph] 
[2023-12-20 15:16:42] -INFO- Successfuly create and import default graph: [gs_interactive_default_graph] 

(py39) ➜  interactive bin/gs_interactive service start
[2023-12-20 15:17:02] -INFO- HOST_DB_HOME = /Users/pomelo/Desktop/graphscope/interactive 
[2023-12-20 15:17:02] -INFO- Finish create log dir 
[2023-12-20 15:17:02] -INFO- Starting database... 
[2023-12-20 15:17:02] -INFO- engine config file is not specified, using default engine config 
[2023-12-20 15:17:02] -INFO- Finish generate config file /tmp//real_engine_config.yaml 
Successfully copied 2.56kB to interactive-server:/home/graphscope/workspace//conf/engine_config.yaml
[2023-12-20 15:17:02] -INFO- graph [gs_interactive_default_graph] exists, start it 
[2023-12-20 15:17:02] -INFO- No running database found, do nothing 
[2023-12-20 15:17:02] -INFO- No graph is running 
[2023-12-20 15:17:09] -INFO- Successfuly stop database 
[2023-12-20 15:17:09] -INFO- container interactive-server is running 
Successfully copied 3.58kB to /tmp/graph0.yaml
Error response from daemon: Could not find the file /home/graphscope/workspace//data/gs_interactive_default_graph/plugins/.enable in container interactive-server
[2023-12-20 15:17:09] -INFO- enable file /tmp//.enable not exists, all stored procedure are enabled 
Successfully copied 3.58kB to interactive-server:/home/graphscope/workspace//data/gs_interactive_default_graph/graph.yaml
[2023-12-20 15:17:09] -INFO- Finish update graph yaml with procedure enabling, add stored proc.edures of size 0. 
[2023-12-20 15:17:09] -INFO- In start datebase, received graph_name = gs_interactive_default_graph, engine_config_file =  
Running cmd: docker exec interactive-server bash -c " /opt/flex/bin/interactive_server -c /home/graphscope/workspace//conf/engine_config.yaml -g /home/graphscope/workspace//data/gs_interactive_default_graph/graph.yaml  --data-path /home/graphscope/workspace//data/gs_interactive_default_graph/indices > /home/graphscope/workspace//logs/server.log 2>&1  & "
[2023-12-20 15:17:13] -ERROR- process /opt/flex/bin/interactive_server is not running in container interactive-server 
[2023-12-20 15:17:13] -ERROR- , use gs_interactive service get_log -o [dir] to see get logs 

(py39) ➜  interactive docker exec interactive-server cat /home/graphscope/workspace/logs/server.log
WARNING: Logging before InitGoogleLogging() is written to STDERR
I1220 15:17:09.336203   130 loader_factory.cc:66] Registering loader: file, format:csv
I1220 15:17:09.336381   130 loader_factory.cc:66] Registering loader: odps, format:arrow
I1220 15:17:09.345469   130 interactive_server.cc:294] Start query service only
I1220 15:17:09.346879   130 schema.cc:815] Parse stored_procedures
I1220 15:17:09.346899   130 schema.cc:824] Parse directory: not-a-directory
E1220 15:17:09.346935   130 schema.cc:826] plugin directory - not-a-directory not found, try with parent dir:/home/graphscope/workspace//data/gs_interactive_default_graph
E1220 15:17:09.347002   130 schema.cc:830] plugin directory - /home/graphscope/workspace//data/gs_interactive_default_graph/not-a-directory not found...
I1220 15:17:09.347071   130 interactive_server.cc:53] codegen dir not exists, create directory
I1220 15:17:09.347149   130 interactive_server.cc:114] codegen-bin is not specified
I1220 15:17:09.347178   130 service_utils.cc:61] infer flex_home as installed, flex_home: /opt/flex
I1220 15:17:09.347203   130 codegen_proxy.cc:52] CodegenProxy working dir: /tmp/codegen/,codegen bin /opt/flex/bin/load_plan_and_gen.sh, ir compiler prop /home/graphscope/workspace//conf/engine_config.yaml, compiler graph schema /home/graphscope/workspace//data/gs_interactive_default_graph/graph.yaml
copy_file_range: Invalid cross-device link

Environment (please complete the following information):

zhanglei1949 commented 10 months ago

It seems to be the problem of the kernel's support for copy_file_range.

yecol commented 9 months ago

You may retry to verify whether the bug has been fixed :)