search

aliciapliego / AI-synergyPredict

0 stars 0 forks source link

PicklingError: Can't pickle : it's not the same object as torch_geometric.data.storage.GlobalStorage #1

Open gsh150801 opened 12 months ago

gsh150801 commented 12 months ago

Things seemed like they were going pretty well until this part. It puzzled me. Have you met this problem? ''' %%time X = ReaderWriter.read_or_dump_data(file_name=norm_join_paths(targetdata_dir_raw, 'X.pkl'), data_gen_fun=get_X_all_pairdata_synergy, data_gen_params=(uniq_mol, pairs, "DataOGB")) ''' '''

PicklingError Traceback (most recent call last) in

/share1-100G/shguan/projs/drug_synergy_prediction/AI-synergyPredict-main/deepadr/utilities.py in read_or_dump_data(file_name, data_gen_fun, data_gen_params) 111 else: 112 data = data_gen_fun(*data_gen_params) --> 113 ReaderWriter.dump_data(data, file_name) 114 return data 115

/share1-100G/shguan/projs/drug_synergy_prediction/AI-synergyPredict-main/deepadr/utilities.py in dump_data(data, file_name, mode) 124 """ 125 with open(file_name, mode) as f: --> 126 pickle.dump(data, f) 127 128 @staticmethod

PicklingError: Can't pickle : it's not the same object as torch_geometric.data.storage.GlobalStorage '''

gsh150801 commented 12 months ago

I don't know whether it's caused by the version mismatched. '''
pyg 2.3.0 py37_torch_1.13.0_cu116 pyg pytorch 1.13.1 py3.7_cuda11.6_cudnn8.3.2_0 pytorch pytorch-cluster 1.6.0 py37_torch_1.13.0_cu116 pyg pytorch-cuda 11.6 h867d48c_1 pytorch pytorch-mutex 1.0 cuda pytorch pytorch-scatter 2.1.0 py37_torch_1.13.0_cu116 pyg pytorch-sparse 0.6.15 py37_torch_1.13.0_cu116 pyg pytorch-spline-conv 1.2.1 py37_torch_1.13.0_cu116 pyg torchaudio 0.13.1 py37_cu116 pytorch torchvision 0.14.1 py37_cu116 pytorch '''