search

alihaydaroglu / suite3d

Fast, accurate, volumetric cell detection. Developed for Light Beads Microscopy, usable for other volumetric 2P. In development
6 stars 0 forks source link

Kernel crashes after restarting crashed jupter notebook #51

Closed InstructorAlan closed 11 months ago

InstructorAlan commented 1 year ago

While running a file which was too big for the GPU we were using, the notebook crashed. After reducing file size and restarting the notebook, running the job_init_pass() crashed the kernel, which then required running the script from the start. As there was a successful initial pass before, the file was not to blame.

When looking at the share memory at /dev/shm/ the first file was still loaded in memory. Clearing the memory with rm 'shared_memory_id' solved the kernel crashing issue.

alihaydaroglu commented 11 months ago

closing this since it's platform-specific and is fixed with a reboot or clearing the memory. though will try to reduce shared memory usage in the future