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alihaydaroglu / suite3d

Fast, accurate, volumetric cell detection. Developed for Light Beads Microscopy, usable for other volumetric 2P. In development
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CUDA compatibility issue #64

Open alihaydaroglu opened 4 months ago

alihaydaroglu commented 4 months ago

reported by @bellafard

runcell('[4]', '/suite3d/Demo.py')
Job directory /media/ssd1/runs/s3d-demo already exists
Loading job directory for demo in /media/ssd1/runs
   Loading dirs 
   Loading default params
   Updated main params file

runcell('[5]', '/suite3d/Demo.py')
   Saved a copy of params at /media/ssd1/runs/s3d-demo/summary
   Updated main params file
Launching initial pass
Saving summary to /media/ssd1/runs/s3d-demo/summary/summary.npy
   Loading init tifs with 29 channels
   Loaded 1 files, total 2.28 GB
   Loaded movie with 100 frames and shape 17, 1000, 720
   Subtracting with estimated coefficient 0.385
   Using 3d registration
   Computing plane alignment shifts
   Applying plane alignment shifts
   Launching 3D GPU reference image calculation
   Launched
Traceback (most recent call last):

  File "/suite3d/Demo.py", line 93, in <module>
    job.run_init_pass()

  File "/suite3d/suite3d/job.py", line 371, in run_init_pass
    init_pass.run_init_pass(self)

  File "/suite3d/suite3d/init_pass.py", line 199, in run_init_pass
    ref.compute_reference_and_masks_3d(mov_fuse, reference_params, log_cb = job.log , use_GPU = params.get('use_GPU_registration', True))

  File "/suite3d/suite3d/reference_image.py", line 1068, in compute_reference_and_masks_3d
    get_reference_img_gpu_3d(mov_cpu, percent_contribute, niter, xpad, ypad, rmins = rmins, rmaxs = rmaxs, batch_size = batch_size, pc_size = pc_size, sigma = sigma, log_cb=log_cb)

  File "/suite3d/suite3d/reference_image.py", line 1156, in get_reference_img_gpu_3d
    phase_corr_shifted, int_shift, pc_peak_loc, subpix_shift, __ = reg_3d.rigid_3d_ref_gpu(mov_cropped, mult_mask, add_mask, refs_f, pc_size, batch_size = batch_size, rmins = None, rmaxs = None, crosstalk_coeff = None)

  File "/suite3d/suite3d/reg_3d.py", line 483, in rigid_3d_ref_gpu
    mempool.free_all_blocks()

  File "cupy/cuda/memory.pyx", line 1449, in cupy.cuda.memory.MemoryPool.free_all_blocks

  File "cupy/cuda/memory.pyx", line 1462, in cupy.cuda.memory.MemoryPool.free_all_blocks

  File "cupy/cuda/device.pyx", line 47, in cupy.cuda.device.get_device_id

  File "cupy_backends/cuda/api/runtime.pyx", line 179, in cupy_backends.cuda.api.runtime.getDevice

  File "cupy_backends/cuda/api/runtime.pyx", line 144, in cupy_backends.cuda.api.runtime.check_status

CUDARuntimeError: cudaErrorCompatNotSupportedOnDevice: forward compatibility was attempted on non supported HW