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alihaydaroglu
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suite3d
Fast, accurate, volumetric cell detection. Developed for Light Beads Microscopy, usable for other volumetric 2P. In development
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add option to skip fusing step completely
#23
alihaydaroglu
closed
1 year ago
1
ROIs at the edges of the FOV
#22
oterocoronel
closed
1 year ago
26
calculate_corr_map crash
#21
oterocoronel
closed
1 year ago
5
Parameter with number of SVD components seems to be ignored
#20
oterocoronel
closed
1 year ago
5
some recordings have bright blood vessels in correlation map
#19
alihaydaroglu
closed
1 year ago
2
channel ordering issues
#18
alihaydaroglu
closed
1 year ago
5
show_summary_plot fails if no crosstalk estimation
#17
alihaydaroglu
closed
1 year ago
3
Memory usage keeps going up during motion correction
#16
oterocoronel
closed
1 year ago
5
Full_Demo assumes existing summary.npy file
#15
Sihao
closed
1 year ago
13
Full_Demo Job()
#14
Sihao
closed
1 year ago
2
expected shape of tif array
#13
Sihao
closed
1 year ago
1
change recommended numpy version
#12
Sihao
closed
1 year ago
2
add nan handling and remove need for cropping edges
#11
alihaydaroglu
closed
1 year ago
1
add a save button to save curation results
#10
alihaydaroglu
closed
4 months ago
0
figure out if there is a file normalization issue in extraction?
#9
alihaydaroglu
closed
4 months ago
2
consider re-interpolating frames to fix changing resolution in x
#8
alihaydaroglu
opened
1 year ago
1
psuedo-3d motion correction
#7
alihaydaroglu
closed
4 months ago
2
Demo01 - show how to load fused movie
#6
jmmanley
closed
1 year ago
1
change n_init_files to n_init_frames in the initial pass
#5
jmmanley
closed
1 year ago
1
multiprocessing forking warning on linux
#4
alihaydaroglu
opened
1 year ago
2
write better install instructions
#3
alihaydaroglu
closed
1 year ago
0
integrate "fusing" of the tiff strips into registration
#2
alihaydaroglu
closed
1 year ago
0
file IO misbehaving with multi-file tiffs
#1
alihaydaroglu
closed
1 year ago
2
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