Y limits for plotting shared doubleton counts

alimanfoo / anhima

Analyse genetic variation.

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Y limits for plotting shared doubleton counts #38

Closed alimanfoo closed 10 years ago

alimanfoo commented 10 years ago

Review how Y axis limits are determined for the anhima.af.plot_shared_doubletons_bar() function.

If raw counts are provided, there could be two options:

Plot raw counts as bar height, with all subplots set to the same Y limits (currently this doesn't happen)
Plot counts normalised by row, so you see relative sharing for each population (as per the 1000 genomes paper), and all subplots set to the same Y limits

alimanfoo commented 10 years ago

See documentation for anhima.f2.plot_shared_doubletons. If relative is True then counts are normalised by row. By default ylim gets set to 0, global maximum, but can be manually overridden.