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alimanfoo / anhima

Analyse genetic variation.
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Samplefix #72

Closed hardingnj closed 9 years ago

hardingnj commented 9 years ago

I think I have another PR pending. Let me know if you want to discuss either and I can split/reorg

alimanfoo commented 9 years ago

Thanks Nick, let's review this tomorrow.

On Monday, October 6, 2014, hardingnj notifications@github.com wrote:

I think I have another PR pending. Let me know if you want to discuss

either and I can split/reorg

You can merge this Pull Request by running

git pull https://github.com/hardingnj/anhima samplefix

Or view, comment on, or merge it at:

https://github.com/alimanfoo/anhima/pull/72 Commit Summary

  • Added check if a basestring
  • resolved conflict
  • Merge branch 'addtped'
  • help..
  • Fixed typo in chrom spec
  • Changing default id of marker. Basing on order leads to problems when merging
  • Changing docstring
  • Merge branch 'master' of https://github.com/hardingnj/anhima
  • Merge branch 'typofix'
  • Merge branch 'master' of
  • Adding test
  • Adding axis = 1, to fix np.take
  • New test to catch bug with sample handling
  • Adding new test h5 file. Converted from test32.vcf

File Changes

Patch Links:

Reply to this email directly or view it on GitHub https://github.com/alimanfoo/anhima/pull/72.

Alistair Miles Head of Epidemiological Informatics Centre for Genomics and Global Health http://cggh.org The Wellcome Trust Centre for Human Genetics Roosevelt Drive Oxford OX3 7BN United Kingdom Web: http://purl.org/net/aliman Email: alimanfoo@gmail.com Tel: +44 (0)1865 287721