A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
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PileupColumn.get_query_positions() behavior differs from PileupRead.query_position #155
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jkoubele closed 11 months ago
edit: sorry, this post was meant for the pysam repo, not for pysamstats. Apparently I cannot delete this issue.