aljpetri / isONform

De novo construction of isoforms from long-read data
GNU General Public License v3.0
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Fixed the behavior of minimizers in Poly-A/C/T/G regions #10

Closed aljpetri closed 1 year ago

aljpetri commented 1 year ago

The Minimizer detection is now more optimized allowing the algorithm to cope with polyA/C/T/G-regions better than previously. Additionally if we find a minimizer_combination to be too abundant we remove it from the list of combinations used for the graph generation as those regions do not help to relate the reads any better.