Improve non-batching runs

aljpetri / isONform

De novo construction of isoforms from long-read data

GNU General Public License v3.0

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Closed FabianJetzinger closed 3 months ago

FabianJetzinger commented 3 months ago

sort instances numerically by cluster ID and then batch ID (faster when not batching)
Always merge results, even when not batching (input is always in clusters)
readability improvements