aljpetri / isONform

De novo construction of isoforms from long-read data
GNU General Public License v3.0
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Bubble pop improvements #8

Closed aljpetri closed 1 year ago

aljpetri commented 1 year ago

This branch consists of changes to the cycle detection that we use in the graph generation as well as improvements to the overall runtime of the Bubble popping algorithm (SimplifyGraph.py). The results for this new version are very well comparable to the results we have shown in the paper (however they differ a bit such as 8 more unique FSMs common for all three tools) The new venn diagrams can be seen below: FSMs NICs