allen-cell-animated / website-3d-cell-viewer

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colorize is scrambled across time series #270

Open toloudis opened 1 month ago

toloudis commented 1 month ago

Description

When colorize is enabled, and you play through time, the colors are not preserved at all.

Expected Behavior

Expect that colorize should preserve the same colors for the same label indices across times.

I realize this is an artifact of how we renormalize intensity data, so information is lost. A part of making this work might be preserving raw intensities in the original channel data. See also: https://github.com/allen-cell-animated/volume-viewer/issues/121 https://github.com/allen-cell-animated/volume-viewer/issues/60 https://github.com/allen-cell-animated/volume-viewer/issues/61, and work in progress at https://github.com/allen-cell-animated/volume-viewer/pull/197