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alliance-genome / agr_archive_initial_prototype

Source code for the Alliance of Genome Resources web portal
http://prod.alliancegenome.org/
MIT License
6 stars 11 forks source link

AGR-431 point RGD BGI and disease data to latest tarball: RGD_0.6.4.t… #358

Closed cmpich closed 7 years ago

cmpich commented 7 years ago

Please merge this into release 0.6 New RGD file available on S3 bucket.

christabone commented 7 years ago

@cmpich Seeing some errors from the Travis build:

Extracting files from (tmp/RGD_0.6_4.tar.gz) ...
Traceback (most recent call last):
  File "fetch_test_index.py", line 7, in <module>
    al.load_from_mods(test_set = True)
  File "/home/travis/build/alliance-genome/agr/indexer/src/loaders/aggregate_loader.py", line 56, in load_from_mods
    for gene_list_of_entries in genes:
  File "/home/travis/build/alliance-genome/agr/indexer/src/mods/rat.py", line 27, in load_genes
    TARFile(path, "RGD_0.6_4.tar.gz").extract_all()
  File "/home/travis/build/alliance-genome/agr/indexer/src/files/tar_file.py", line 13, in extract_all
    tfile = tarfile.open(self.path + "/" + self.tarfilename, 'r')
  File "/opt/python/2.7.12/lib/python2.7/tarfile.py", line 1678, in open
    raise ReadError("file could not be opened successfully")
tarfile.ReadError: file could not be opened successfully
make: *** [test_index] Error 1