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allind / EukDetect

MIT License
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A error in Ubuntu running by conda #10

Closed hannet91 closed 3 years ago

hannet91 commented 3 years ago

Hi,

I got a error in running Eukdetect by linux, the error report as following:

03/07/2021 17:57:15: Parsing config file ... 03/07/2021 17:57:15: Error: missing files in database directory: all_buscos_v4.fna.1.bt2, all_buscos_v4.fna.2.bt2, all_buscos_v4.fna.3.bt2, all_buscos_v4.fna.4.bt2, all_buscos_v4.fna.rev.1.bt2, all_buscos_v4.fna.rev.2.bt2

I am used the 1.2 version and newest database, could you tell me how to fix this question. Thanks!

Liao

allind commented 3 years ago

Thanks for reaching out. Could you post the contents of your config file? I suspect you have the wrong database prefix in the config file - you likely need to change it to "ncbi_eukprot_met_arch_markers.fna".

allind commented 3 years ago

This is coming from an issue in your config file. Assuming your read files are titled "H0-1_clean_1.fastq.gz" and similar, the sample section should look like this:

samples:
  H0-1_clean:
  H0-2_clean:

Let me know if that addresses the issue.

hannet91 commented 3 years ago

Thanks for help. It can work.