allind / EukDetect

MIT License
43 stars 16 forks source link

Combining results from multiple samples #26

Closed rishibhandari63 closed 2 years ago

rishibhandari63 commented 2 years ago

With the updated database and scripts, I was able to get the relative abundance (Sample1_filtered_hits_eukfrac.txt) of different eukaryotes in my metagenome samples. What is the best way to combine my results from different samples ( I have 60 samples) into one so I can use various visualization tools?

allind commented 2 years ago

Check out the newly added combine_rpks_eukfrac.py script in the eukdetect/ directory. Please reach out with any questions or issues.