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allind / EukDetect

MIT License
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Test Fail (Error: could not locate database directory.\n) #31

Closed erfanshekarriz closed 1 year ago

erfanshekarriz commented 1 year ago

Hello, I'm following the instructions precisely installing EukDetect, but the test gives me the following error: 

(eukdetect)python tests/test_eukdetect.py
.FFF.
======================================================================
FAIL: test_class (__main__._02_RunRunall)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "tests/test_eukdetect.py", line 26, in test_class
    self.assertTrue(code==0, msg=stderr)
AssertionError: False is not true : b'11/06/2022 07:19:26:  Parsing config file ...\n11/06/2022 07:19:26:  Error: could not locate database directory.\n'

======================================================================
FAIL: test_class (__main__._03_RunAlnCmd)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "tests/test_eukdetect.py", line 33, in test_class
    self.assertTrue(code==0, msg=stderr)
AssertionError: False is not true : b'11/06/2022 07:19:26:  Parsing config file ...\n11/06/2022 07:19:26:  Error: could not locate database directory.\n'

======================================================================
FAIL: test_class (__main__._04_RunAln_and_filter)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "tests/test_eukdetect.py", line 44, in test_class
    self.assertTrue(alncode==0 and filtercode == 0, msg=alnstderr + filterstderr)
AssertionError: False is not true : b'11/06/2022 07:19:26:  Parsing config file ...\n11/06/2022 07:19:26:  Error: could not locate database directory.\n11/06/2022 07:19:27:  Parsing config file ...\n11/06/2022 07:19:27:  Error: could not locate database directory.\n'

----------------------------------------------------------------------
Ran 5 tests in 1.298s

Any quick fixes on this?

Best,

Erfan

allind commented 1 year ago

Hi Erfan,

In the test config file that you're using, what's the database directory you've specified? It looks like it's not readable.

Best, Abigail

erfanshekarriz commented 1 year ago

Dear Abigail,

Thank you for your prompt reply. The issue has been resolved by altering the config file in the test directory. Completely missed that part of the instructions. My bad.

Best,

Erfan