I have my reads stored in bam-files and need to convert them to fastq before running EukDetect. I have to convert one-by-one since I a lot of input files and want to keep the bam files and cannot store both bam and fastq. Can this conversion be done as a loop within EukDetect?
I have my reads stored in bam-files and need to convert them to fastq before running EukDetect. I have to convert one-by-one since I a lot of input files and want to keep the bam files and cannot store both bam and fastq. Can this conversion be done as a loop within EukDetect?