allind / EukDetect

MIT License
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Error installing EukDetect #44

Open ilarioferrocino opened 1 year ago

ilarioferrocino commented 1 year ago

Hi there i'm try to install EukDetect but i got this error: Package pillow conflicts for: biopython==1.70=np112py36_1 -> reportlab -> pillow[version='>=2.4.0|>=9|>=9.0.0|>=4.0.0'] reportlab==3.5.44=py36hcce1d1f_0 -> pillow[version='>=2.4.0'] pillow==7.2.0=py36h8328e55_1The following specifications were found to be incompatible with your system:

Your installed version is: 2.27

Note that strict channel priority may have removed packages required for satisfiability.

Any suggestion?

allind commented 1 year ago

Hi, thanks for reaching out. Can you copy the command you're running along with the full output you're getting when you run this command?

ilarioferrocino commented 1 year ago

Hi here a piece of the errror (too long to copy)

conda env update --name eukdetect -f environment.yml Collecting package metadata (repodata.json): done Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed \ \
Solving environment: / Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed - -

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package python-dateutil conflicts for: python-dateutil==2.8.1=py_0 s3transfer==0.3.3=py36h9f0ad1d_1 -> botocore[version='>=1.12.36,<2.0.0'] -> python-dateutil[version='>=2.1,<2.8.1|>=2.1,<3.0.0'] botocore==1.17.20=pyh9f0ad1d_0 -> python-dateutil[version='>=2.1,<3.0.0'] snakemake==5.3.0=py36_1 -> pandas -> python-dateutil[version='>=2.5.|>=2.6.1|>=2.7.3|>=2.8.1'] pandas==0.24.2=py36hf484d3e_0 -> python-dateutil[version='>=2.5.'] boto3==1.14.20=pyh9f0ad1d_0 -> botocore[version='>=1.17.20,<1.18.0'] -> python-dateutil[version='>=2.1,<3.0.0']

Package _libgcc_mutex conflicts for: qt==5.12.5=hd8c4c69_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libxpm==3.5.13=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] bowtie2==2.4.1=py36h7f0b59b_2 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] markupsafe==1.1.1=py36h8c4c3a4_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libcurl==7.71.1=hcdd3856_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libuuid==2.32.1=h14c3975_1000 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] jpeg==9d=h516909a_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] sqlite==3.32.3=hcee41ef_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] tbb==2020.1=hc9558a2_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libtool==2.4.6=h14c3975_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] glib==2.65.0=h6f030ca_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libprotobuf==3.12.3=h8b12597_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libgomp==9.2.0=h24d8f2e_2 -> _libgcc_mutex==0.1=conda_forge bedtools==2.29.2=hc088bd4_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] samtools==1.10=h9402c20_2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] freetype==2.10.2=he06d7ca_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pillow==7.2.0=py36h8328e55_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libclang==9.0.1=default_hde54327_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] readline==8.0=h46ee950_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-xproto==7.0.31=h14c3975_1007 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] nspr==4.26=he1b5a44_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] bzip2==1.0.8=h516909a_2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-renderproto==0.11.1=h14c3975_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] datrie==0.8.2=py36h8c4c3a4_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] yarl==1.4.2=py36h516909a_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libsm==1.2.3=h84519dc_1000 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pandas==0.24.2=py36hf484d3e_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pthread-stubs==0.4=h14c3975_1001 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libtiff==4.1.0=hc7e4089_6 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libxrender==0.9.10=h516909a_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] fontconfig==2.13.1=h86ecdb6_1001 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] krb5==1.17.1=hfafb76e_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-xextproto==7.3.0=h14c3975_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] _openmp_mutex==4.5=0_gnu -> libgomp[version='>=7.3.0'] -> _libgcc_mutex==0.1=main libxkbcommon==0.10.0=he1b5a44_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] bcrypt==3.1.7=py36h8c4c3a4_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pynacl==1.3.0=py36h516909a_1001 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] openssl==1.1.1g=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] perl==5.26.2=h516909a_1006 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] cffi==1.14.0=py36hd463f26_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] expat==2.2.9=he1b5a44_2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libxau==1.0.9=h14c3975_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] harfbuzz==2.4.0=h9f30f68_3 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] graphite2==1.3.13=he1b5a44_1001 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libxt==1.1.5=h516909a_1003 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] zlib==1.2.11=h516909a_1006 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libxdmcp==1.1.3=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] brotlipy==0.7.0=py36h8c4c3a4_1000 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] wrapt==1.12.1=py36h8c4c3a4_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] cryptography==2.9.2=py36h45558ae_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] ncurses==6.1=hf484d3e_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] msgpack-python==1.0.0=py36hdb11119_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libgcc-ng==9.2.0=h24d8f2e_2 -> _libgcc_mutex==0.1=conda_forge reportlab==3.5.44=py36hcce1d1f_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libedit==3.1.20191231=h46ee950_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] psutil==5.7.0=py36h8c4c3a4_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libgcc-ng==9.2.0=h24d8f2e_2 -> _openmp_mutex[version='>=4.5'] -> _libgcc_mutex==0.1=main pyyaml==5.3.1=py36h8c4c3a4_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] multidict==4.7.5=py36h8c4c3a4_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] openblas==0.3.3=h9ac9557_1001 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libx11==1.6.9=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] lxml==4.5.2=py36h17c4326_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libwebp-base==1.1.0=h516909a_3 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] tk==8.6.10=hed695b0_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] lz4-c==1.9.2=he1b5a44_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pysam==0.16.0.1=py36h4c34d4e_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libxcb==1.13=h14c3975_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pygraphviz==1.5=py36h8c4c3a4_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] icu==64.2=he1b5a44_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libdeflate==1.6=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-libice==1.0.10=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libffi==3.2.1=he1b5a44_1007 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] scipy==1.2.1=py36_blas_openblash1522bff_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] graphviz==2.38.0=hf68f40c_1011 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] _libgcc_mutex==0.1=conda_forge xorg-libxext==1.3.4=h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] gstreamer==1.14.5=h36ae1b5_2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] gettext==0.19.8.1=hc5be6a0_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libpng==1.6.37=hed695b0_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pango==1.40.14=he7ab937_1005 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pixman==0.38.0=h516909a_1003 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] protobuf==3.12.3=py36h831f99a_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libssh2==1.9.0=hab1572f_3 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pcre==8.44=he1b5a44_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] python==3.6.10=h8356626_1011_cpython -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libllvm9==9.0.1=he513fc3_1 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libxslt==1.1.33=h31b3aaa_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] pyqt==5.12.3=py36haa643ae_3 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] zstd==1.4.4=h6597ccf_3 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libiconv==1.15=h516909a_1006 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] cairo==1.16.0=hcf35c78_1003 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] nss==3.47=he751ad9_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] libxml2==2.9.10=hee79883_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] gst-plugins-base==1.14.5=h0935bb2_2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] numpy==1.12.1=py36_blas_openblash1522bff_1001 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xz==5.2.5=h516909a_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] htslib==1.10.2=hd3b49d5_1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] _openmp_mutex==4.5=0_gnu -> _libgcc_mutex==0.1=conda_forge libgcc==7.2.0=h69d50b8_2 -> libgcc-ng[version='>=7.2.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] aiohttp==3.6.2=py36h516909a_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] dbus==1.13.6=he372182_0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] lcms2==2.11=hbd6801e_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] xorg-kbproto==1.0.7=h14c3975_1002 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main'] yaml==0.2.5=h516909a_0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main']

Package six conflicts for: google-api-core==1.17.0=py36h9f0ad1d_0 -> google-auth[version='>=1.14.0,<2.0.0dev'] -> six[version='>=1.9.0'] google-resumable-media==0.5.1=pyh9f0ad1d_0 -> six dropbox==10.1.1=pyh9f0ad1d_0 -> six[version='>=1.3.0'] pynacl==1.3.0=py36h516909a_1001 -> six urllib3==1.25.9=py_0 -> cryptography[version='>=1.3.4'] -> six[version='>=1.4.1|>=1.5.2'] botocore==1.17.20=pyh9f0ad1d_0 -> python-dateutil[version='>=2.1,<3.0.0'] -> six[version='>=1.5'] aioeasywebdav==2.4.0=py36_1000 -> six pysftp==0.2.9=py_1 -> paramiko[version='>=1.17.0'] -> six python-irodsclient==0.8.2=py_0 -> six[version='>=1.10.0'] . . . . . Package libjpeg-turbo conflicts for: pillow==7.2.0=py36h8328e55_1 -> lcms2[version='>=2.11,<3.0a0'] -> libjpeg-turbo[version='>=2.1.5.1,<3.0a0'] reportlab==3.5.44=py36hcce1d1f_0 -> pillow[version='>=2.4.0'] -> libjpeg-turbo[version='>=2.1.4,<3.0a0|>=2.1.5.1,<3.0a0']

Package pillow conflicts for: biopython==1.70=np112py36_1 -> reportlab -> pillow[version='>=2.4.0|>=9|>=9.0.0|>=4.0.0'] reportlab==3.5.44=py36hcce1d1f_0 -> pillow[version='>=2.4.0'] pillow==7.2.0=py36h8328e55_1The following specifications were found to be incompatible with your system:

Your installed version is: 2.27

Note that strict channel priority may have removed packages required for satisfiability.

allind commented 1 year ago

Thanks. This is probably something to do with your conda environment - these package conflicts are quite extensive. You might have more luck, or at least might get a more informative error message, if you try to install using mamba, which is a package manager that's often faster and better at resolving conflicts than the default conda package manager. If you don't have mamba installed, install it - that's conda install -c conda-forge mamba. Then, use mamba to create the eukdetect environment - mamba env create -n eukdetect -f environment.yml