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allysonlister / swo

The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, licences, provenance and associated data.
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Protege cannot parse file: org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParserException: [line=8:column=17] Expecting rdf:RDF element. #40

Closed tschaffter closed 5 years ago

tschaffter commented 5 years ago

Using Protege version 5.5.0, I can successfully open the file swo_merged.owl from the latest release (SWO Release 1.6).

However, the following error is thrown by Protege when trying to open either:

image

Error: org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParserException: [line=8:column=17] Expecting rdf:RDF element.

Stack Trace:

org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParserException: [line=8:column=17] Expecting rdf:RDF element.

Full Stack Trace
-----------------------------------------------------------------------------------------

org.semanticweb.owlapi.rdf.rdfxml.parser.OWLRDFXMLParserException: org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParserException: [line=8:column=17] Expecting rdf:RDF element.
    at org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:76)
    at uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl.loadOWLOntology(OWLOntologyFactoryImpl.java:221)
    at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.actualParse(OWLOntologyManagerImpl.java:1262)
    at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:1215)
    at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntologyFromOntologyDocument(OWLOntologyManagerImpl.java:1172)
    at org.protege.editor.owl.model.io.OntologyLoader.loadOntologyInternal(OntologyLoader.java:104)
    at org.protege.editor.owl.model.io.OntologyLoader.lambda$loadOntologyInOtherThread$0(OntologyLoader.java:62)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
Caused by: org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParserException: [line=8:column=17] Expecting rdf:RDF element.
    at org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParser.verify(RDFParser.java:451)
    at org.semanticweb.owlapi.rdf.rdfxml.parser.StartRDF.startElement(StartRDF.java:187)
    at org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParser.startElement(RDFParser.java:201)
    at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:509)
    at com.sun.org.apache.xerces.internal.impl.dtd.XMLDTDValidator.startElement(XMLDTDValidator.java:745)
    at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanStartElement(XMLNSDocumentScannerImpl.java:374)
    at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl$NSContentDriver.scanRootElementHook(XMLNSDocumentScannerImpl.java:613)
    at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:3132)
    at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$PrologDriver.next(XMLDocumentScannerImpl.java:852)
    at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:602)
    at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:112)
    at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:505)
    at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:841)
    at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:770)
    at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
    at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
    at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:643)
    at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl.parse(SAXParserImpl.java:327)
    at org.semanticweb.owlapi.rdf.rdfxml.parser.RDFParser.parse(RDFParser.java:145)
    at org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:73)
    ... 10 more
allysonlister commented 5 years ago

Good morning! Apologies that you are having problems. We do actually have a newer release, but I haven't built a GitHub Release tag yet for it. 1.7 is the latest, and you can find it at https://github.com/allysonlister/swo/tree/master/release (In fact, you'll always be able to find the latest release files at that location.) There is also a README with details.

We made some big changes with 1.7 so please use that version. Please let me know if you have any issues with loading that version.

Additionally, I will make a "proper" release for GitHub and close this ticket when that's done. Thanks for pointing it out.

Thanks again, and best wishes, Allyson

allysonlister commented 5 years ago

I've built a release, you can find it at https://github.com/allysonlister/swo/releases/tag/v1.7

thanks! Please let me know if you have any further questions.

:) Allyson

tschaffter commented 4 years ago

@allysonlister Thanks!