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almaan / stereoscope

Spatial mapping of cell types by integration of transcriptomics data
MIT License
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fix h5ad #19

Closed giovp closed 3 years ago

giovp commented 3 years ago

index creation would fail with adata.obsm["spatial"]. We settled with storing coordinates as arrays, see here for more info: https://scanpy.readthedocs.io/en/stable/api/scanpy.read_visium.html