almaan / stereoscope

Spatial mapping of cell types by integration of transcriptomics data
MIT License
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Exclude spots not covered by the tissue #23

Open jiazhao97 opened 3 years ago

jiazhao97 commented 3 years ago

Hi, thank you for the nice work!

I find that when handling both mouse brain ST / Visium data and developmental heart spatial data, you excluded all spots that were not covered by the tissue. How can I get access to the spot information (whether one specific spot is covered by the target tissue)? Could you share such information for all datasets you analyzed in the paper?

Thank you!