almaan / stereoscope

Spatial mapping of cell types by integration of transcriptomics data
MIT License
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Calculation/Prepation for the First Column of Spatial Transcriptomics (ST) Count Data File #40

Open kevin-de-granta opened 10 months ago

kevin-de-granta commented 10 months ago

Stereoscope is awesome! Just, could you please kindly tell us, when preparing for Spatial Transcriptomics (ST) Count Data File, how we can calculate for the first column? For example, for contents like "4.83x31.08", "19.98x24.93", "15.87x9.01". It would be much more appreciated if you could offer some explanations on the meaning of quoted strings above.

More Info: cat st-hippo1.tsv | cut -f 1,2,3 | head -n 5 Gnai3 Cdc45 4.83x31.08 0.0 0.0 19.98x24.93 0.0 0.0 15.87x9.01 1.0 0.0 5.83x27.97 1.0 0.0