Hi !
I installed stereoscope and I am trying to run it however I am facing lots of issues... One of the errors I get is the following :
`Traceback (most recent call last):
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/errors.py", line 776, in new_error_context
yield
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 235, in lower_block
self.lower_inst(inst)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 380, in lower_inst
val = self.lower_assign(ty, inst)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 556, in lower_assign
return self.lower_expr(ty, value)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 1084, in lower_expr
res = self.lower_call(resty, expr)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 815, in lower_call
res = self._lower_call_normal(fnty, expr, signature)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 1055, in _lower_call_normal
res = impl(self.builder, argvals, self.loc)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/base.py", line 1194, in call
res = self._imp(self._context, builder, self._sig, args, loc=loc)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/base.py", line 1224, in wrapper
return fn(*args, **kwargs)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/cpython/rangeobj.py", line 40, in range1_impl
state.stop = stop
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/cgutils.py", line 164, in setattr
self[self._datamodel.get_field_position(field)] = value
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/cgutils.py", line 188, in setitem
raise TypeError("Invalid store of {value.type} to "
TypeError: Invalid store of i64 to i32 in <numba.core.datamodel.models.RangeModel object at 0x7f16106f97f0> (trying to write member #1)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/bioinfo/anaconda3/bin/stereoscope", line 33, in
sys.exit(load_entry_point('stereoscope==0.3.1', 'console_scripts', 'stereoscope')())
File "/home/bioinfo/anaconda3/bin/stereoscope", line 25, in importlib_load_entry_point
return next(matches).load()
File "/home/bioinfo/anaconda3/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/home/bioinfo/anaconda3/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 671, in _load_unlocked
File "", line 783, in exec_module
File "", line 219, in _call_with_framesremoved
File "/home/bioinfo/.local/lib/python3.8/site-packages/stereoscope-0.3.1-py3.8.egg/stsc/main.py", line 5, in
from stsc.look import look
File "/home/bioinfo/.local/lib/python3.8/site-packages/stereoscope-0.3.1-py3.8.egg/stsc/look.py", line 32, in
import umap
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/init.py", line 1, in
from .umap import UMAP
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/umap_.py", line 54, in
from umap.layouts import (
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/layouts.py", line 39, in
def rdist(x, y):
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/decorators.py", line 226, in wrapper
disp.compile(sig)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 979, in compile
cres = self._compiler.compile(args, return_type)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 141, in compile
status, retval = self._compile_cached(args, return_type)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 155, in _compile_cached
retval = self._compile_core(args, return_type)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 168, in _compile_core
cres = compiler.compile_extra(self.targetdescr.typing_context,
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 686, in compile_extra
return pipeline.compile_extra(func)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 428, in compile_extra
return self._compile_bytecode()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 492, in _compile_bytecode
return self._compile_core()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 471, in _compile_core
raise e
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 462, in _compile_core
pm.run(self.state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 343, in run
raise patched_exception
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 334, in run
self._runPass(idx, pass_inst, state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_lock.py", line 35, in _acquire_compile_lock
return func(*args, **kwargs)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 289, in _runPass
mutated |= check(pss.run_pass, internal_state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 262, in check
mangled = func(compiler_state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/typed_passes.py", line 396, in run_pass
lower.lower()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 138, in lower
self.lower_normal_function(self.fndesc)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 192, in lower_normal_function
entry_block_tail = self.lower_function_body()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 221, in lower_function_body
self.lower_block(block)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 235, in lower_block
self.lower_inst(inst)
File "/home/bioinfo/anaconda3/lib/python3.8/contextlib.py", line 131, in exit
self.gen.throw(type, value, traceback)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/errors.py", line 786, in new_error_context
raise newerr.with_traceback(tb)
numba.core.errors.LoweringError: Failed in nopython mode pipeline (step: native lowering)
Invalid store of i64 to i32 in <numba.core.datamodel.models.RangeModel object at 0x7f16106f97f0> (trying to write member #1)
File "../anaconda3/lib/python3.8/site-packages/umap/layouts.py", line 53:
def rdist(x, y):
Hi ! I installed stereoscope and I am trying to run it however I am facing lots of issues... One of the errors I get is the following :
`Traceback (most recent call last): File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/errors.py", line 776, in new_error_context yield File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 235, in lower_block self.lower_inst(inst) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 380, in lower_inst val = self.lower_assign(ty, inst) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 556, in lower_assign return self.lower_expr(ty, value) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 1084, in lower_expr res = self.lower_call(resty, expr) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 815, in lower_call res = self._lower_call_normal(fnty, expr, signature) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 1055, in _lower_call_normal res = impl(self.builder, argvals, self.loc) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/base.py", line 1194, in call res = self._imp(self._context, builder, self._sig, args, loc=loc) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/base.py", line 1224, in wrapper return fn(*args, **kwargs) File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/cpython/rangeobj.py", line 40, in range1_impl state.stop = stop File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/cgutils.py", line 164, in setattr self[self._datamodel.get_field_position(field)] = value File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/cgutils.py", line 188, in setitem raise TypeError("Invalid store of {value.type} to " TypeError: Invalid store of i64 to i32 in <numba.core.datamodel.models.RangeModel object at 0x7f16106f97f0> (trying to write member #1)
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/bioinfo/anaconda3/bin/stereoscope", line 33, in
sys.exit(load_entry_point('stereoscope==0.3.1', 'console_scripts', 'stereoscope')())
File "/home/bioinfo/anaconda3/bin/stereoscope", line 25, in importlib_load_entry_point
return next(matches).load()
File "/home/bioinfo/anaconda3/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/home/bioinfo/anaconda3/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 671, in _load_unlocked
File "", line 783, in exec_module
File "", line 219, in _call_with_framesremoved
File "/home/bioinfo/.local/lib/python3.8/site-packages/stereoscope-0.3.1-py3.8.egg/stsc/main.py", line 5, in
from stsc.look import look
File "/home/bioinfo/.local/lib/python3.8/site-packages/stereoscope-0.3.1-py3.8.egg/stsc/look.py", line 32, in
import umap
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/init.py", line 1, in
from .umap import UMAP
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/umap_.py", line 54, in
from umap.layouts import (
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/layouts.py", line 39, in
def rdist(x, y):
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/decorators.py", line 226, in wrapper
disp.compile(sig)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 979, in compile
cres = self._compiler.compile(args, return_type)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 141, in compile
status, retval = self._compile_cached(args, return_type)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 155, in _compile_cached
retval = self._compile_core(args, return_type)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/dispatcher.py", line 168, in _compile_core
cres = compiler.compile_extra(self.targetdescr.typing_context,
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 686, in compile_extra
return pipeline.compile_extra(func)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 428, in compile_extra
return self._compile_bytecode()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 492, in _compile_bytecode
return self._compile_core()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 471, in _compile_core
raise e
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler.py", line 462, in _compile_core
pm.run(self.state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 343, in run
raise patched_exception
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 334, in run
self._runPass(idx, pass_inst, state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_lock.py", line 35, in _acquire_compile_lock
return func(*args, **kwargs)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 289, in _runPass
mutated |= check(pss.run_pass, internal_state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/compiler_machinery.py", line 262, in check
mangled = func(compiler_state)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/typed_passes.py", line 396, in run_pass
lower.lower()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 138, in lower
self.lower_normal_function(self.fndesc)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 192, in lower_normal_function
entry_block_tail = self.lower_function_body()
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 221, in lower_function_body
self.lower_block(block)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/lowering.py", line 235, in lower_block
self.lower_inst(inst)
File "/home/bioinfo/anaconda3/lib/python3.8/contextlib.py", line 131, in exit
self.gen.throw(type, value, traceback)
File "/home/bioinfo/anaconda3/lib/python3.8/site-packages/numba-0.54.1-py3.8-linux-x86_64.egg/numba/core/errors.py", line 786, in new_error_context
raise newerr.with_traceback(tb)
numba.core.errors.LoweringError: Failed in nopython mode pipeline (step: native lowering)
Invalid store of i64 to i32 in <numba.core.datamodel.models.RangeModel object at 0x7f16106f97f0> (trying to write member #1)
File "../anaconda3/lib/python3.8/site-packages/umap/layouts.py", line 53: def rdist(x, y):
During: lowering "$20call_function.7 = call $16load_global.5(dim, func=$16load_global.5, args=[Var(dim, layouts.py:52)], kws=(), vararg=None, target=None)" at /home/bioinfo/anaconda3/lib/python3.8/site-packages/umap/layouts.py (53) `
Do you know how I can get rid of this error ?